The planktonic community of freshwater Rotifera in 27 subtropical lakes was studied to assess the relative importance of physicochemical factors and crustacean zooplankton as determinants of rotifer density and species distribution. Factor analysis and multiple linear regressions showed that 21.9% and 29.9% of the variance in rotifer density was explained by physicochemical factors and crustaceans, respectively. Larger rotifer density was possible in shallower lakes with higher concentration of inorganic nitrogen and less herbivorous crustaceans such as Sinocalanus dorrii and Daphnia. Redundancy analysis showed that the variances of rotifer species distribution explained by crustaceans and physicochemical factors were 26.9% and 31.0%, respectively. Further analysis demonstrated that the variances explained by pure crustaceans and pure physicochemical factors were 12.5% and 16.6%, respectively. However, these two percentages were not statistically different. Rotifer species distribution was strongly associated with Chl a and Moina micrura. Their coexistence with crustaceans seemed to be determined by their defense against potential predators and competitors.